scRNA-Seq Guides

📄️ scRNA-seq Preprocessing

This document outlines the standard for single-cell RNA sequencing (scRNA-seq) datasets generated by a block that processes raw sequencing data. Upstream blocks that perform scRNA-seq preprocessing should produce a p-frame containing the p-columns defined here. This ensures that downstream tools for analysis, visualization, and comparison can operate on a consistent and predictable data structure.

📄️ Dimensionality Reduction

Overview

📄️ Leiden Clustering

Overview

📄️ Cell Type Annotation

Overview

📄️ Cluster Markers

Overview

📄️ Compositional Analysis

Overview

📄️ Pseudotime Inference

Overview

📄️ Differential Expression

Overview